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Questions - cytoscape

cyBrowser for cytoscape can't loading any graph plots

I have any problem with cytoscape, actually cyBrowser. It doesn't work correct. There are 3 different shapes: I actually work at my windows 10 PC and cyBrowser during create any graph plots (specific...
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kkras

cytoscape

Votes: 0

Answers: 1

Latest Answer

OK, there are a couple of quick work-arounds. First, when you create your plots, you should see an html file in your home directory. This is created by cyPlot when you request the plot to be created ...
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Scooter Morris

Cytoscape Integration with Neo4j

I'm trying to build a webpage on which embed a visualization window for my local graph database. The graph database I'm using is Neo4j and for visualization I'm trying to use Cytoscape. Until now, I e...
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sicdb

graph

neo4j

graph-visualization

cytoscape

cytoscape-web

Votes: 0

Answers: 1

Latest Answer

Typically, I answer Cytoscape desktop (not Cytoscape.js) questions, but I have built a web site (see https://spoke.rbvi.ucsf.edu) that does exactly what you are proposing. For a number of reasons, we...
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Scooter Morris

How to automatically change the width of a preview edge according to the zoom level in cytoscape.js-edgehandles?

I am using cytoscape.js and the edgehandles extension (https://github.com/cytoscape/cytoscape.js-edgehandles). Currently I am automatically resizing the line width of my edge using the event 'zoom': c...
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lhoupert

cytoscape.js

cytoscape

Votes: 0

Answers: 1

Latest Answer

You can give a function for a style. The drawback is the functions are not JSON serializable. So If you need to import/export a graph with cy.json() you should also apply the function styles. cy.style...
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canbax

Running cytoscape in HPC, how to increase performance?

I'm helping a user get setup with cytoscape on our HPC and I'm wondering if there are ways besides the opencl support to get higher performance from Cytoscape. What I mean is I have a 94 cpu node that...
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Li Brary

cytoscape

Votes: 0

Answers: 1

Latest Answer

Well, the short answer is that "it depends". If the network is heavily partitioned, then the individual partitions are laid out in parallel. If it is a single partition, then most of the f...
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Scooter Morris

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