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Questions - fiji

Write ImageJ ROI file from R

In R, I have a matrix that equals an image, where each cell is 0 if it is background and >0 if it is a ROI. Each ROI has its distinct number, so if it spans several matrix cells all these cells wil...
test-img

NicolasH2

r

imagej

roi

fiji

Votes: 0

Answers: 1

Latest Answer

I don't know how to write an roiset in R that can be read by ImageJ, but your matrix is essentially a segmented image. So you could import your matrix as an image into ImageJ and then use a simple mac...
test-img

quantixed

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