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slurm, make #SBATCH --array read the number of lines of a txt file
I have the following slurm script (script.sh) that will run on HPC 25 jobs in parallel with #SBATCH --array=0-24. Each job will take one variable from file.txt and use it as $VAR variable.
#!/bin/bash...
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Votes: 0
Answers: 2
slurm - use array and limit the number of jobs running at the same time until they finish
Let's suppose I have the following bash script (bash.sh) to be run on a HPC using slurm:
#!/bin/bash
#SBATCH --job-name test
#SBATCH --ntasks 4
#SBATCH --time 00-05:00
#SBATCH --output out
#SBATCH --e...
aaaaa
Votes: 0
Answers: 1
Adding HPC Cluster nodes to a Kubernetes env running on local VM/host
I would like to run Kubernetes on a local VM/host and add compute nodes allocated via slurm job allocation on the remote supercomputer. The compute nodes on the remote supercomputer are accessible on ...
Amit Ruhela
Votes: 0
Answers: 0
How to make Snakemake recognize Globus remote files using Globus CLI?
I am working in a high performance computing grid environment, where large-scale data transfers are done via Globus. I would like to use Snakemake to pull data from a Globus path, process the data, an...
taltman
Votes: 0
Answers: 1